Disease Ontology Workshop

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Day 1, 8:30AM-5:30PM Monday, January 18, 2010

8:30-8:45am Welcome (Lynn/Warren) [[1]]

8:45-9:15am Flash Introductions

9:15-10:00am Existing DO resources, policies, etc [[2]]

10:00-10:30am Coffee

10:30-11:15am OGMS, BFO, OBO Foundry (Barry Smith) [[3]]

11:15-12:00 PATO and term decomposition (Chris Mungall)

12:00-1:00pm lunch

1:30-2:00pm MGI, MPO and DO (Judy Blake)

2:00-2:45pm Human Phenotype Ontology (Peter Robinson)

3:00-3:45pm VPH and RICORDO (Bernard de Bono)

3:45-4:30pm OMIM (Ada Hamosh) [[4]]

4:30-5:30pm Open Discussion

5:30pm Adjourn to dinner

Day 2, 8:30AM-3:00PM Tuesday, January 19, 2010

8:30-9:15am recap: PATO and term decomposition (Chris Mungall)

9:15-10:00am IDO (Richard Scheuermann) [[5]]

10:00-10:15am Break

10:15-11:00am NIF (Maryann Martone) [[6]]

11:00-12:00pm Open discussion

12:00-1:00pm lunch

1:00-1:30 (Gilbert Feng) Gene Answers [[7]] 1:30-1:45 (Pan Du) Summarize Gene Function using DO 1:45-2:00 (Simon Lin) FunDO, frequency analysis, Wordle for DO

2:00pm-3pm: Open discussions, BOF session, Other issues, follow-up

3pm. End of the open meeting

3:15pm-6pm ESB meeting


  • Anita Bandrowski, NIF
  • Howard Bilofsky, U Penn
  • Judy Blake, TJL
  • Rex Chisholm, Northwestern, EAB
  • Bernard de Bono, EBI
  • Ada Hamosh, OMIM
  • Suzi Lewis, Berkeley
  • Mary Ann Martone, UCSD
  • Chris Mungall, Berkeley
  • Peter Robinson, Charite in Berlin
  • Richard Scheuermann, UT Southwestern
  • Mary Shimoyama, RGD
  • Patrick Shironoshita, InfoTech Soft
  • Barry Smith, U Buffalo, NCBO
  • Marcus Chibucos, UMB
  • Suvarna Nadendla, UMB
  • LaRon Hughes, NU
  • Simon Lin, NU
  • Pan Du, NU
  • Gilbert Feng, NU
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